Choose a BLAST Program to use: -Select BLAST Program- blastn-------Nucleotide vs. Nucleotide-------- blastp-------Protein vs. Protein-------------- blastx-------Nucleotide vs. Protein----------- blastx------Protein vs. Nucleotide----------- blastx------Nucleotide vs. Nucleotide--------
Select database to search: Actinidia_chinensis.cds Actinidia_chinensis.fasta Actinidia_chinensis.pep Aegilops_tauschii.fasta Amborella_trichopoda.cds Amborella_trichopoda.fasta Amborella_trichopoda.pep Ananas_comosus.fasta Arabidopsis_lyrata.cds Arabidopsis_lyrata.fasta Arabidopsis_lyrata.pep Arabidopsis_thaliana.cds Arabidopsis_thaliana.fasta Arabidopsis_thaliana.pep Arachis_duranensis.cds Arachis_duranensis.fasta Arachis_duranensis.pep Arachis_ipaensis.cds Arachis_ipaensis.fasta Arachis_ipaensis.pep Aureococcus_anophagefferens.cds Aureococcus_anophagefferens.fasta Aureococcus_anophagefferens.pep Beta_vulgaris.cds Beta_vulgaris.fasta Beta_vulgaris.pep Betula_nana.fasta Bigelowiella_natans.cds Bigelowiella_natans.fasta Bigelowiella_natans.pep Boea_hygrometrica.cds Boea_hygrometrica.fasta Boea_hygrometrica.pep Brachypodium_distachyon.cds Brachypodium_distachyon.fasta Brachypodium_distachyon.pep Brassica_napus.cds Brassica_napus.fasta Brassica_napus.pep Brassica_oleracea.cds Brassica_oleracea.fasta Brassica_oleracea.pep Brassica_rapa.cds Brassica_rapa.fasta Brassica_rapa.pep Cajanus_cajan.cds Cajanus_cajan.fasta Cajanus_cajan.pep Cannabis_sativa.fasta Capsicum_annuum_var.glabriusculum.cds Capsicum_annuum_var.glabriusculum.fasta Capsicum_annuum_var.glabriusculum.pep Capsicum_annuum_var.Zunla-1.cds Capsicum_annuum_var.Zunla-1.fasta Capsicum_annuum_var.Zunla-1.pep Carica_papaya.cds Carica_papaya.fasta Carica_papaya.pep Chlamydomonas_reinhardtii.cds Chlamydomonas_reinhardtii.fasta Chlamydomonas_reinhardtii.pep Chlorella_variabilis.cds Chlorella_variabilis.fasta Chlorella_variabilis.pep Cicer_arietinum.cds Cicer_arietinum.fasta Cicer_arietinum.pep Citrullus_lanatus.cds Citrullus_lanatus.fasta Citrullus_lanatus.pep Citrus_clementina.cds Citrus_clementina.fasta Citrus_clementina.pep Citrus_sinensis.cds Citrus_sinensis.fasta Citrus_sinensis.pep Coffea_canephora.cds Coffea_canephora.fasta Coffea_canephora.pep Cucumis_melo.fasta Cucumis_sativus.cds Cucumis_sativus.fasta Cucumis_sativus.pep Cyanophora_paradoxa.fasta Dendrobium_catenatum.fasta Dendrobium_officinale.fasta Dianthus_caryophyllus.cds Dianthus_caryophyllus.fasta Dianthus_caryophyllus.pep Ectocarpus_siliculosus.cds Ectocarpus_siliculosus.fasta Ectocarpus_siliculosus.pep Elaeis_guineensis.cds Elaeis_guineensis.fasta Elaeis_guineensis.pep Emiliania_huxleyi.cds Emiliania_huxleyi.fasta Emiliania_huxleyi.pep Eucalyptus_grandis.cds Eucalyptus_grandis.fasta Eucalyptus_grandis.pep Fragaria_ananassa.cds Fragaria_ananassa.fasta Fragaria_ananassa.pep Fragaria_vesca.fasta Glycine_max.cds Glycine_max.fasta Glycine_max.pep Glycine_soja.cds Glycine_soja.fasta Glycine_soja.pep Gossypium_arboretum.cds Gossypium_arboretum.fasta Gossypium_arboretum.pep Gossypium_hirsutum.cds Gossypium_hirsutum.fasta Gossypium_hirsutum.pep Gossypium_raimondii.cds Gossypium_raimondii.fasta Gossypium_raimondii.pep Guillardia_theta.cds Guillardia_theta.fasta Guillardia_theta.pep Hevea_brasiliensis.fasta Hordeum_vulgare.cds Hordeum_vulgare.fasta Hordeum_vulgare.pep Humulus_lupulus_var.cordifolius.fasta Humulus_lupulus_var.lupulus.fasta Jatropha_curcas.fasta Linum_usitatissimum.cds Linum_usitatissimum.fasta Linum_usitatissimum.pep Lotus_japonicus.fasta Malus_domestica.fasta Medicago_truncatula.cds Medicago_truncatula.fasta Medicago_truncatula.pep Morus_notabilis.fasta Musa_acuminata.cds Musa_acuminata.fasta Musa_acuminata.pep Nelumbo_nucifera.cds Nelumbo_nucifera.fasta Nelumbo_nucifera.pep Nicotiana_tabacum_var.Basma.cds Nicotiana_tabacum_var.Basma.fasta Nicotiana_tabacum_var.Basma.pep Nicotiana_tabacum_var.K326.cds Nicotiana_tabacum_var.K326.fasta Nicotiana_tabacum_var.K326.pep Nicotiana_tabacum_var.TN90.cds Nicotiana_tabacum_var.TN90.fasta Nicotiana_tabacum_var.TN90.pep Oropetium_thomaeum.fasta Oryza_brachyantha.cds Oryza_brachyantha.fasta Oryza_brachyantha.pep Oryza_glaberrima.cds Oryza_glaberrima.fasta Oryza_glaberrima.pep Oryza_sativa_L.ssp.indica.cds Oryza_sativa_L.ssp.indica.fasta Oryza_sativa_L.ssp.indica.pep Oryza_sativa_L.ssp.japonica.cds Oryza_sativa_L.ssp.japonica.fasta Oryza_sativa_L.ssp.japonica.pep Phaeodactylum_tricornutum.cds Phaeodactylum_tricornutum.fasta Phaeodactylum_tricornutum.pep Phalaenopsis_equestris.cds Phalaenopsis_equestris.fasta Phalaenopsis_equestris.pep Phaseolus_vulgaris.cds Phaseolus_vulgaris.fasta Phaseolus_vulgaris.pep Phoenix_dactylifera.fasta Phyllostachys_heterocycla.fasta Physcomitrella_patens.cds Physcomitrella_patens.fasta Physcomitrella_patens.pep Picea_abies.fasta Pinus_taeda.fasta Populus_euphratica.cds Populus_euphratica.fasta Populus_euphratica.pep Populus_trichocarpa.cds Populus_trichocarpa.fasta Populus_trichocarpa.pep Primula_veris.fasta Prunus_mume.cds Prunus_mume.fasta Prunus_mume.pep Prunus_persica.cds Prunus_persica.fasta Prunus_persica.pep Pyrus_bretschneideri.cds Pyrus_bretschneideri.fasta Pyrus_bretschneideri.pep Ricinus_communis.cds Ricinus_communis.fasta Ricinus_communis.pep Saccharina_japonica.fasta Salix_suchowensis.cds Salix_suchowensis.fasta Salix_suchowensis.pep Selaginella_moellendorffii.cds Selaginella_moellendorffii.fasta Selaginella_moellendorffii.pep Sesamum_indicum.cds Sesamum_indicum.fasta Sesamum_indicum.pep Setaria_italica.fasta Solanum_lycopersicum.cds Solanum_lycopersicum.fasta Solanum_lycopersicum.pep Solanum_melongena.cds Solanum_melongena.fasta Solanum_melongena.pep Solanum_pennellii.cds Solanum_pennellii.fasta Solanum_pennellii.pep Solanum_tuberosum.fasta Sorghum_bicolor.cds Sorghum_bicolor.fasta Sorghum_bicolor.pep Spirodela_polyrhiza.fasta Symbiodinium_minutum.cds Symbiodinium_minutum.fasta Symbiodinium_minutum.pep Tarenaya_hassleriana.fasta Thellungiella_parvula.cds Thellungiella_parvula.fasta Thellungiella_parvula.pep Thellungiella_salsuginea.fasta Theobroma_cacao.cds Theobroma_cacao.fasta Theobroma_cacao.pep Trifolium_pratense.fasta Triticum_aestivum.fasta Triticum_urartu.cds Triticum_urartu.fasta Triticum_urartu.pep Utricularia_gibba.cds Utricularia_gibba.fasta Utricularia_gibba.pep Vigna_angularis.cds Vigna_angularis.fasta Vigna_angularis.pep Vigna_radiata.cds Vigna_radiata.fasta Vigna_radiata.pep Vitis_vinifera.cds Vitis_vinifera.fasta Vitis_vinifera.pep Volvox_carteri.cds Volvox_carteri.fasta Volvox_carteri.pep Zea_mays.cds Zea_mays.fasta Zea_mays.pep Zizania_latifolia.fasta Ziziphus_jujuba.cds Ziziphus_jujuba.fasta Ziziphus_jujuba.pep Zostera_marina.cds Zostera_marina.fasta Zostera_marina.pep
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
Graphical Overview Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table Descriptions 0 10 50 100 250 500 Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6