SesameFG: Sesame Functional Genomics Database

 

fdas

Three accessions of sesame were de novo sequenced and assembled. One accession named ‘Zhongzhi13’ was a widely grown variety in China. And the other two accessions, ‘Mishuozhima’ and ‘Baizhima’, were representative landraces from Eastern and Southern China respectively. The genome of ‘Zhongzhi13’ was reference genome for sesame functional genome research. The genomes of ‘Mishuozhima’ and ‘Baizhima’ had been aligned with ‘Zhongzhi13’ genome and homologous regions had been identified.

Detailed information about the alignment are provided and all you need input is the coordinate . For example, LG1,1,10000.

Search the colinear region(smaller than 1Mb) between the Mishuozhima and the reference genome using reference cordinate
Search with Range

 

1000000) { continue; } $query=mysql_query("select * from mishuozhima_colinear_map where Ref_chro = '$chromo' and Ref_start >= '$start' and Ref_end <= '$end'"); if($query) { ?>
Contig_name Contig_start Contig_end Ref_chromosome Ref_start Ref_end Contig_match_len Ref_match_len Identity Contig_length Ref_chro_length Contig_coverage Ref_cho_coverage
Search the colinear region (smaller than 1Mb)between the Mishuozhima and the reference genome using Mishuozhima contig cordinate
Search with Range

 

1000000) { continue; } $query=mysql_query("select * from mishuozhima_colinear_map where coting_name = '$chromo' and contig_start >= '$start' and contig_end <= '$end'"); if($query) { ?>
Contig_name Contig_start Contig_end Ref_chromosome Ref_start Ref_end Contig_match_len Ref_match_len Identity Contig_length Ref_chro_length Contig_coverage Ref_cho_coverage

 

Search the colinear region (smaller than 1Mb)between the Baizhima and the reference genome using reference cordinate
Search with Range

 

1000000) { continue; } $query=mysql_query("select * from xiaolizhima_colinear_map where ref_chro = '$chromo' and ref_start >= '$start' and ref_end <= '$end'"); if($query) { ?>
Contig_name Contig_start Contig_end Ref_chromosome Ref_start Ref_end Contig_match_len Ref_match_len Identity Contig_length Ref_chro_length Contig_coverage Ref_cho_coverage
Search the colinear region (smaller than 1Mb) between the Baizhima and the reference genome using Baizhima coordinate
Search with Range
1000000) { continue; } $query=mysql_query("select * from xiaolizhima_colinear_map where contig_name = '$chromo' and contig_start >= '$start' and contig_end <= '$end'"); if($query) { ?>
Contig_name Contig_start Contig_end Ref_chromosome Ref_start Ref_end Contig_match_len Ref_match_len Identity Contig_length Ref_chro_length Contig_coverage Ref_cho_coverage