SesameFG: Sesame Functional Genomics Database

 

 

The core collections of sesame with 705 accessions from worldwide were genome re-sequenced. The genome sequence alignments generated 5,407,981 SNPs totally. All SNPs could be searched by the genome region, Gene ID and SNP ID. Please input a range, a gene ID or a SNP ID to query the SNPs

 

Eg:1,100-10000. It will show the SNP located in the region from 100 to 10000 in the Linkage group 1

Search SNP with range

 

'$start' and pos < '$end'"); if($query) { ?>
Number SNP ID Linkage group Position Reference allele Alternative allele
">

 

 

Search SNP between the range of a chosen SNP.

Eg: Sis0000000011,-1000,1000. It will show the SNP located from the 1000bp before the polymorphic site

and the 1000bp after the polymorphic site.

Search SNP with SNP ID

 

'$gene_start' and pos < '$gene_end'"); if($query ) { ?>
Number SNP ID Linkage group Position Reference allele Alternative allele
">

 

Search SNP between the Range of gene.

Eg:SIN_1003804,-1000,1000. Ir will show located in range -1000 from SIN_1003804 to 1000 after SIN_1003804

Search SNP within gene

 

'$gene_start' and pos < '$gene_end'"); if($query ) { ?>
Number SNP ID Linkage group Position Reference allele Alternative allele
">