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 Tools>>MISAweb:

MISAweb - a web for MIcroSAtellite identification tool from PMDBase

Note:  MISAweb allows the identification and localization of perfect microsatellites as well as compound microsatellites which are interrupted by a certain number of bases on certain genomic sequence. This web service was from the website, PMDBase (http://www.sesame-bioinfo.org/PMDBase/) [1]. If you want to identify bulk microsatellite DNAs and design marker sequences quickly, please go to PMDBase.

Enter sequence below in FASTA format:

Example: demo sequence

Parameter: i. definition(unit_size,min_repeats): 1-10 2-6 3-5 4-5 5-5 6-5; ii. interruptions(max_difference_between_2_SSRs): 100.

 

    

 

Reference:

1. Jingyin Yu, Komivi Dossa, Linhai Wang, Yanxin Zhang, Xin Wei, Boshou Liao, Xiurong Zhang. PMDBase: a database for studying microsatellite DNA and marker development in plants. Nucleic Acids Res. 2017 Jan 4;45(D1):D1046-D1053. doi: 10.1093/nar/gkw906.

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