1. What's the difference between
Sesamum indicum genomics data v2.0 and v1.0? |
Response: Sesamum indicum genomics
data v1.0 was assembled based on the 16 genetics linkage groups. And
v2.0 was assembled based on 13 chromosomes in Sesamum indicum
genome, which was consistant with the
Sesamum indicum true karyotype. |
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2. What's the difference between
Sinbase2.0 and Sinbase? |
Response: Sinbase2.0 focused on studying Sesamum indicum
multi-omics data, which contained genomics, functional genomics,
genetics, transcriptomics and proteomics. Sinbase2.0 integrated above
multi-omics data using protein-coding genes in Sesamum indicum
genome data v2.0. But Sinbase only focused on genomics, genetics and
comparative genomics based on 13 chromosomes in Sesamum indicum
genome. |
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3. How to get the gene sets
annotation about other Sesamum indicum varieties except
Sesamum indicum var. Zhongzhi13? |
Response:
Now, we didn't supply gene sets annotation about other Sesamum
indicum varieties in Sinbase2.0. We have finished the gene sets
annotation about other Sesamum indicum varieties and will
update them in Sinbase2.0 soon. |
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4. How many public open-resource
softwares localized in Sinbase2.0? |
Response:
Now, we embedded BLAST, Genome Browser and MISAweb softwares or web
services in Sinbase2.0. BLAST software was used to search orthologous
genes or genomic regions in Sesamum indicum genome. Genome
Browser was used to show the distribution of genome componets in
Sesamum indicum genome and collinear relationships between
Sesamum indicum and orther genomes. MISAweb was a web service of
microsatellite DNA identification in plant genomes, which was
developed by Dr. Jingyin Yu in PMDBase
(http://www.sesame-bioinfo.org/PMDBase). |
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Contact Us: |
Oil Crops Research Institute, CAAS, PRC. |
Xiurong Zhang |
PI |
Jingyin Yu |
Multi-Omics Data Integration and Database Development |
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