Resources>>Markers, Genes and
QTLs>>Functional Genes: |
|
Note: Please click gene ID to get
detail information of corresponding sesame functional
gene. |
Gene ID |
Location |
Start |
End |
Strand |
Traits |
Authors |
SIN_1021756 |
chr1 |
112,137 |
114,638 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021706 |
chr1 |
529,694 |
532,276 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021633 |
chr1 |
1,098,255 |
1,099,563 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021592 |
chr1 |
1,375,338 |
1,377,961 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1021562 |
chr1 |
1,619,531 |
1,621,361 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021522 |
chr1 |
1,937,549 |
1,942,624 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1021518 |
chr1 |
1,960,323 |
1,962,305 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1013730 |
chr1 |
10,694,327 |
10,697,518 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1013723 |
chr1 |
10,738,924 |
10,746,509 |
- |
Drought |
Dossa et al.,2017 |
SIN_1013658 |
chr1 |
11,248,216 |
11,248,554 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1009480 |
chr1 |
12,491,368 |
12,493,490 |
+ |
Susceptibility of Phyllody Disease |
Wei et al., 2015 |
SIN_1009490 |
chr1 |
12,563,374 |
12,567,426 |
- |
Drought |
Dossa et al.,2017 |
SIN_1009625 |
chr1 |
13,451,712 |
13,453,023 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1010868 |
chr1 |
14,476,510 |
14,479,866 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1010870 |
chr1 |
14,502,157 |
14,507,390 |
- |
Sesamin |
Wei et al., 2015 |
SIN_1010897 |
chr1 |
14,763,746 |
14,764,195 |
+ |
Susceptibility of Phyllody Disease |
Wei et al., 2015 |
SIN_1010931 |
chr1 |
15,022,169 |
15,024,408 |
+ |
Oil Content |
Wei et al., 2015 |
SIN_1003248 |
chr1 |
15,473,676 |
15,474,731 |
+ |
Oil Content |
Wei et al., 2015 |
SIN_1003219 |
chr1 |
15,662,276 |
15,663,895 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1023511 |
chr1 |
16,276,874 |
16,278,531 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1017183 |
chr2 |
763,411 |
764,825 |
+ |
Full Flowering Date |
Wei et al., 2015 |
SIN_1017074 |
chr2 |
1,522,129 |
1,534,867 |
+ |
Resistance of Macrophomina Phaseoli |
Wei et al., 2015 |
SIN_1017036 |
chr2 |
2,015,970 |
2,018,240 |
+ |
Susceptibility of Phyllody Disease |
Wei et al., 2015 |
SIN_1017003 |
chr2 |
2,415,948 |
2,418,123 |
+ |
Full Flowering Date |
Wei et al., 2015 |
SIN_1013258 |
chr2 |
4,941,796 |
4,943,063 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1002405 |
chr2 |
6,586,114 |
6,589,104 |
- |
Drought |
Dossa et al.,2017 |
SIN_1024017 |
chr2 |
7,471,939 |
7,474,226 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1023837 |
chr2 |
10,037,794 |
10,038,819 |
- |
Full Flowering Date |
Wei et al., 2015 |
SIN_1023833 |
chr2 |
10,082,897 |
10,089,287 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1023704 |
chr2 |
11,257,346 |
11,261,223 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1023669 |
chr2 |
11,658,854 |
11,659,952 |
+ |
Waterlogging |
Wang et al., 2021 |
SIN_1021150 |
chr2 |
13,356,398 |
13,358,345 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1018333 |
chr2 |
16,081,087 |
16,081,905 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1018308 |
chr2 |
16,302,643 |
16,304,508 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1018135 |
chr2 |
17,485,706 |
17,488,883 |
+ |
Plant Height |
Wei et al., 2015 |
SIN_1016159 |
chr3 |
279,553 |
280,261 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1016160 |
chr3 |
281,856 |
283,483 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1016325 |
chr3 |
1,570,614 |
1,571,579 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1020516 |
chr3 |
3,323,169 |
3,329,237 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1020268 |
chr3 |
5,449,855 |
5,451,509 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1005073 |
chr3 |
9,867,986 |
9,868,545 |
- |
Drought |
Dossa et al.,2017 |
SIN_1017373 |
chr3 |
13,634,396 |
13,635,065 |
- |
Drought |
Dossa et al.,2017 |
SIN_1017329 |
chr3 |
14,109,542 |
14,117,266 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1022133 |
chr3 |
14,675,098 |
14,679,888 |
- |
C20:1 |
Wei et al., 2015 |
SIN_1022131 |
chr3 |
14,696,750 |
14,699,634 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1022073 |
chr3 |
15,225,388 |
15,227,338 |
- |
Drought |
Dossa et al.,2017 |
SIN_1022053 |
chr3 |
15,393,265 |
15,395,925 |
- |
Drought |
Dossa et al.,2017 |
SIN_1021964 |
chr3 |
16,058,048 |
16,060,977 |
- |
Stress |
Wang et al., 2016, Dossa et al.,2017 |
SIN_1021942 |
chr3 |
16,235,241 |
16,238,969 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021891 |
chr3 |
16,693,852 |
16,696,976 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1021853 |
chr3 |
17,103,177 |
17,113,264 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1021838 |
chr3 |
17,330,010 |
17,332,029 |
+ |
Full Flowering Date |
Wei et al., 2015 |
SIN_1021785 |
chr3 |
17,925,250 |
17,928,123 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1015799 |
chr3 |
21,383,637 |
21,394,541 |
- |
Full Flowering Date |
Wei et al., 2015 |
SIN_1011474 |
chr3 |
23,914,112 |
23,915,153 |
- |
Drought |
Dossa et al.,2017 |
SIN_1009037 |
chr3 |
24,682,780 |
24,685,161 |
- |
Drought |
Dossa et al.,2017 |
SIN_1009021 |
chr3 |
24,786,096 |
24,789,753 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1008977 |
chr3 |
25,029,369 |
25,030,882 |
- |
C18:1/C18:2 |
Wei et al., 2015 |
SIN_1006317 |
chr4 |
115,495 |
118,080 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1006240 |
chr4 |
633,016 |
634,638 |
- |
Drought |
Dossa et al.,2017 |
SIN_1018639 |
chr4 |
1,245,614 |
1,247,381 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1018790 |
chr4 |
2,617,712 |
2,618,820 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1018865 |
chr4 |
3,396,943 |
3,401,049 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1005952 |
chr4 |
9,097,739 |
9,100,961 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1005897 |
chr4 |
9,454,389 |
9,457,687 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1005876 |
chr4 |
9,622,561 |
9,623,848 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1016733 |
chr4 |
12,245,665 |
12,246,339 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1016759 |
chr4 |
12,428,252 |
12,430,048 |
- |
Seed Color |
Wei et al., 2015; 2016 |
SIN_1012139 |
chr4 |
13,437,229 |
13,438,251 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1013020 |
chr4 |
17,291,441 |
17,293,143 |
- |
Initiate Flowering Date |
Wei et al., 2015 |
SIN_1013005 |
chr4 |
17,383,392 |
17,388,020 |
+ |
Oil Content |
Wei et al., 2015 |
SIN_1007109 |
chr4 |
19,733,492 |
19,737,213 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1007062 |
chr4 |
20,136,108 |
20,141,969 |
- |
Life Cycle Period |
Wei et al., 2015 |
SIN_1003867 |
chr5 |
453,687 |
457,493 |
- |
SFA |
Wei et al., 2015 |
SIN_1011796 |
chr5 |
2,090,557 |
2,092,208 |
- |
Full Flowering Date |
Wei et al., 2015 |
SIN_1020101 |
chr5 |
3,095,577 |
3,097,816 |
- |
Drought |
Dossa et al.,2017 |
SIN_1023555 |
chr5 |
3,534,975 |
3,541,245 |
+ |
Susceptibility of Phyllody Disease |
Wei et al., 2015 |
SIN_1013480 |
chr5 |
11,812,189 |
11,813,177 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1007671 |
chr5 |
12,640,666 |
12,646,176 |
+ |
C18:0 |
Wei et al., 2015 |
SIN_1007554 |
chr5 |
13,599,972 |
13,607,897 |
+ |
Oil Content |
Wei et al., 2015 |
SIN_1005440 |
chr5 |
15,725,654 |
15,733,055 |
+ |
C18:0 |
Wei et al., 2015 |
SIN_1005470 |
chr5 |
15,958,654 |
15,962,753 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1005540 |
chr5 |
16,393,467 |
16,394,625 |
- |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1022545 |
chr6 |
571,431 |
572,917 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1022538 |
chr6 |
615,812 |
616,945 |
- |
Full Flowering Date |
Wei et al., 2015 |
SIN_1012778 |
chr6 |
2,637,972 |
2,639,957 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1002783 |
chr6 |
3,754,721 |
3,759,827 |
- |
Drought |
Dossa et al.,2017 |
SIN_1002762 |
chr6 |
3,960,349 |
3,960,924 |
+ |
Waterlogging |
Wang et al., 2018 |
SIN_1020854 |
chr6 |
6,951,612 |
6,952,038 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1005989 |
chr6 |
8,140,754 |
8,149,300 |
- |
Maturation Period |
Wei et al., 2015 |
SIN_1018527 |
chr6 |
14,233,119 |
14,233,820 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1015527 |
chr6 |
17,204,126 |
17,207,256 |
+ |
Flower Lip Color |
Wei et al., 2015 |
SIN_1015471 |
chr6 |
17,652,452 |
17,652,979 |
- |
sesamin production |
Wang et al., 2014 |
SIN_1023190 |
chr6 |
18,268,666 |
18,271,595 |
- |
Drought |
Dossa et al.,2017 |
SIN_1023248 |
chr6 |
18,815,869 |
18,823,406 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1009836 |
chr6 |
21,782,657 |
21,786,431 |
- |
SFA |
Wei et al., 2015 |
SIN_1009785 |
chr6 |
22,224,240 |
22,227,802 |
+ |
C18:1 |
Wei et al., 2015 |
SIN_1009752 |
chr6 |
22,469,117 |
22,471,886 |
- |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1012376 |
chr6 |
23,597,742 |
23,600,222 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1012646 |
chr6 |
25,260,408 |
25,264,319 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1001198 |
chr7 |
94,492 |
95,580 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1000761 |
chr7 |
1,386,688 |
1,386,996 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1006338 |
chr7 |
4,337,574 |
4,339,883 |
+ |
Capsule Number per Axil |
Wei et al., 2015 |
SIN_1011539 |
chr7 |
6,916,577 |
6,917,865 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1011713 |
chr7 |
8,493,176 |
8,493,463 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1007270 |
chr7 |
9,847,474 |
9,851,752 |
+ |
Full Flowering Date |
Wei et al., 2015 |
SIN_1001140 |
chr7 |
11,197,775 |
11,198,308 |
- |
Drought |
Dossa et al.,2017 |
SIN_1000454 |
chr7 |
11,545,179 |
11,547,099 |
+ |
Stress |
Wang et al., 2016, Dossa et al.,2017 |
SIN_1004716 |
chr7 |
12,284,169 |
12,284,609 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1004770 |
chr7 |
12,714,596 |
12,718,641 |
- |
Drought |
Dossa et al.,2017 |
SIN_1009235 |
chr7 |
13,805,802 |
13,809,005 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1008597 |
chr7 |
16,733,830 |
16,734,128 |
- |
Drought |
Dossa et al.,2017 |
SIN_1019747 |
chr8 |
1,661,953 |
1,670,303 |
- |
Seed Number per Capsule |
Wei et al., 2015 |
SIN_1019756 |
chr8 |
1,723,965 |
1,727,825 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1006066 |
chr8 |
19,134,361 |
19,135,593 |
+ |
Waterlogging |
Wang et al., 2019 |
SIN_1022640 |
chr8 |
19,902,834 |
19,907,262 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1022846 |
chr8 |
21,537,028 |
21,538,175 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1023018 |
chr8 |
22,701,205 |
22,702,698 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1010473 |
chr9 |
47,381 |
48,855 |
- |
Corolla Color |
Wei et al., 2015 |
SIN_1010507 |
chr9 |
260,772 |
265,989 |
- |
Drought |
Dossa et al.,2017 |
SIN_1010510 |
chr9 |
290,264 |
294,507 |
- |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1010554 |
chr9 |
649,613 |
651,421 |
- |
Indterminate habit |
Zhang et al., 2016 |
SIN_1010604 |
chr9 |
906,663 |
909,555 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1010609 |
chr9 |
930,981 |
932,112 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1024544 |
chr9 |
2,314,823 |
2,315,939 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1024415 |
chr9 |
3,327,531 |
3,330,467 |
- |
Drought |
Dossa et al.,2017 |
SIN_1024378 |
chr9 |
3,604,964 |
3,619,864 |
+ |
Susceptibility of Phyllody Disease |
Wei et al., 2015 |
SIN_1024296 |
chr9 |
4,169,439 |
4,177,042 |
+ |
C18:0 |
Wei et al., 2015 |
SIN_1024094 |
chr9 |
5,864,237 |
5,867,280 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1025539 |
chr9 |
17,467,819 |
17,469,728 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1025617 |
chr9 |
18,113,097 |
18,116,784 |
- |
Petiole Color |
Wei et al., 2015 |
SIN_1025734 |
chr9 |
19,081,115 |
19,083,283 |
+ |
sesamin production |
Wang et al., 2014 |
SIN_1004921 |
chr9 |
19,989,511 |
19,990,471 |
+ |
Petiole Color |
Wei et al., 2015 |
SIN_1007879 |
chr9 |
21,541,010 |
21,541,510 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1012279 |
chr10 |
6,543,702 |
6,550,194 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1017733 |
chr10 |
10,257,087 |
10,262,923 |
+ |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1019167 |
chr10 |
13,161,584 |
13,162,065 |
- |
Oil Content |
Wei et al., 2015 |
SIN_1019140 |
chr10 |
13,488,003 |
13,491,133 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1019138 |
chr10 |
13,505,932 |
13,508,166 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1019137 |
chr10 |
13,511,901 |
13,513,401 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1019072 |
chr10 |
14,083,719 |
14,085,611 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1018901 |
chr10 |
15,507,063 |
15,508,144 |
- |
Drought |
Dossa et al.,2017 |
SIN_1002810 |
chr10 |
15,717,311 |
15,718,384 |
- |
Drought |
Dossa et al.,2017 |
SIN_1002815 |
chr10 |
15,744,298 |
15,746,052 |
- |
TAG biosynthesis |
Wang et al., 2014 |
SIN_1000315 |
chr10 |
17,053,092 |
17,057,885 |
- |
Drought |
Dossa et al.,2017 |
SIN_1000316 |
chr10 |
17,063,042 |
17,067,206 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1009969 |
chr10 |
17,081,827 |
17,085,124 |
- |
Drought |
Dossa et al.,2017 |
SIN_1010119 |
chr10 |
18,045,406 |
18,047,792 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1005755 |
chr11 |
133,877 |
135,812 |
+ |
Sesamin |
Wei et al., 2015 |
SIN_1009923 |
chr11 |
1,460,089 |
1,465,876 |
- |
Oil Content |
Wei et al., 2015 |
SIN_1008571 |
chr11 |
3,821,436 |
3,823,266 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1024652 |
chr11 |
10,209,511 |
10,215,052 |
+ |
C16:0/C16:1, |
Wei et al., 2015 |
SIN_1010987 |
chr11 |
13,805,866 |
13,806,645 |
+ |
Waterlogging |
Wang et al., 2017 |
SIN_1010986 |
chr11 |
13,807,942 |
13,808,370 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1016812 |
chr12 |
491,897 |
493,034 |
- |
Drought |
Dossa et al.,2017 |
SIN_1007213 |
chr12 |
3,020,135 |
3,030,748 |
- |
Oil Content |
Wei et al., 2015 |
SIN_1022381 |
chr12 |
9,218,608 |
9,221,269 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1014512 |
chr12 |
9,837,931 |
9,840,019 |
+ |
Plant Height |
Wei et al., 2015 |
SIN_1006934 |
chr12 |
12,431,470 |
12,432,576 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1007045 |
chr12 |
13,054,455 |
13,055,752 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1001803 |
chr12 |
14,922,801 |
14,926,284 |
- |
C16:0 |
Wei et al., 2015 |
SIN_1006686 |
chr12 |
15,206,595 |
15,207,521 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1000722 |
chr13 |
8,948 |
10,874 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1020045 |
chr13 |
2,455,206 |
2,462,611 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1019256 |
chr13 |
9,604,385 |
9,611,279 |
- |
SFA |
Wei et al., 2015 |
SIN_1000175 |
C00625 |
84 |
1,865 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1000163 |
C00660 |
1 |
4,237 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1000100 |
C00873 |
332 |
2,865 |
- |
Drought |
Dossa et al.,2017 |
SIN_1000415 |
scaffold00341 |
14,535 |
14,931 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1000367 |
scaffold00364 |
1,505 |
4,171 |
+ |
Waterlogging |
Wang et al., 2016 |
SIN_1000300 |
scaffold00422 |
9 |
3,552 |
+ |
Drought |
Dossa et al.,2017 |
SIN_1000262 |
scaffold00462 |
8,646 |
9,875 |
- |
Drought |
Dossa et al.,2017 |
SIN_1000257 |
scaffold00467 |
2,282 |
3,660 |
- |
Stress |
Wang et al., 2016, Dossa et al.,2017 |
SIN_1000237 |
scaffold00495 |
9,541 |
10,134 |
- |
Waterlogging |
Wang et al., 2016 |
SIN_1000234 |
scaffold00502 |
727 |
1,077 |
- |
Waterlogging |
Wang et al., 2016 |
|
|