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 Document>>Statistics:
√ Genomics Statistics:
I. Statistics of genome components of Sesamum indicum genomics data v2.0.
Categories Protein-coding Genes Repeat Elements Non-coding RNAs Total
Chromosome 1 2,162 14,142 92 16,396
Chromosome 2 1,922 11,922 76 13,920
Chromosome 3 2,678 16,627 121 19,426
Chromosome 4 1,998 15,731 85 17,814
Chromosome 5 1,509 13,885 89 15,483
Chromosome 6 2,696 17,932 124 20,752
Chromosome 7 1,625 13,020 222 14,867
Chromosome 8 2,692 17,984 149 20,825
Chromosome 9 2,502 13,826 181 16,509
Chromosome 10 1,958 14,468 129 16,555
Chromosome 11 1,403 10,919 63 12,385
Chromosome 12 1,807 10,947 112 12,866
Chromosome 13 1,426 12,589 130 14,145
Chromosome Un 770 23,175 175 24,120
Total 27,148 207,167 1,748 236,063
II. Comparison of versions 1.0 and 2.0 of Sesamum indicum genomics data
Categories Version 2.0 Scaffold Numbers v2.0 Genome Size v2.0 (Mb)

Version 1.0

Scaffold Numbers v1.0 Genome Size v1.0 (Mb)
  Chromosome 1 17 20.26 Linkage Group 1 10 18.58
Chromosome 2 25 18.42 Linkage Group 2 8 18.5
Chromosome 3 22 25.85 Linkage Group 3 14 24.93
Chromosome 4 27 20.58 Linkage Group 4 18 17.36
Chromosome 5 23 16.58 Linkage Group 5 13 18.9
Chromosome 6 24 25.97 Linkage Group 6 13 25.29
Chromosome 7 34 16.76 Linkage Group 7 14 11.73
Chromosome 8 65 26.18 Linkage Group 8 9 21.52
Chromosome 9 14 22.85 Linkage Group 9&15 11 22.46
Chromosome 10 22 19.49 Linkage Group 10 10 17.25
Chromosome 11 14 14.05 Linkage Group 11 9 15.45
Chromosome 12 18 16.28 Linkage Group 12&16 10 11.34
Chromosome 13 22 16.47 Linkage Group 13&14 11 9.93
Total 13 chromosomes 327 259.73 16 linkage groups 150 233.22
 
Comparative Genomics Statistics:
I. Intra-species comparative analysis
Species Total Scaffolds or Contigs Anchored Scaffolds or Contigs Unanchored Scaffolds or Contigs
Sesamum indicum var. Zhongzhi13 vs. Yuzhi11 5,868 2,788 3,080
Sesamum indicum var. Zhongzhi13 vs. Swetha 76,023 18,390 57,633
Sesamum indicum var. Zhongzhi13 vs. Baizhima 73,395 18,825 54,570
Sesamum indicum var. Zhongzhi13 vs. Mishuozhima 49,167 21,373 27,794
II. Interspecies comparative analysis
Species Collinear regions Involved Genes in S. indicum
Sesamum indicum var. Zhongzhi13 vs. Arabidopsis thaliana 587 5,754
Sesamum indicum var. Zhongzhi13 vs. Oryza sativa 66 466
Sesamum indicum var. Zhongzhi13 vs. Sorghum bicolor 133 892
Sesamum indicum var. Zhongzhi13 vs. Solanum lycopersicum 591 8,240
Sesamum indicum var. Zhongzhi13 vs. Solanum tuberosum 127 968
Sesamum indicum var. Zhongzhi13 vs. Vitis vinifera 519 7,906
 
Transcriptomics Statistics:
Experiments Numbers of Samples Involved Tissues Involved Genes
Waterlogging Resistance 10 Root 22,509
Drought Tolerance 10 Leaf 21,577
Three Color Seeds 13 Seed and Capsule 22,250
Determinate and Indeterminate Growth Habits 6 Stem tips and Leaf 25,838
Seed Development 36 Seed and Capsule 22,095
 
 
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