 Document>>Statistics: |
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| √ Genomics Statistics: |
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I. Statistics of genome components of Sesamum indicum genomics data
v2.0. |
| Categories |
Protein-coding Genes |
Repeat Elements |
Non-coding RNAs |
Total |
| Chromosome 1 |
2,162 |
14,142 |
92 |
16,396 |
| Chromosome 2 |
1,922 |
11,922 |
76 |
13,920 |
| Chromosome 3 |
2,678 |
16,627 |
121 |
19,426 |
| Chromosome 4 |
1,998 |
15,731 |
85 |
17,814 |
| Chromosome 5 |
1,509 |
13,885 |
89 |
15,483 |
| Chromosome 6 |
2,696 |
17,932 |
124 |
20,752 |
| Chromosome 7 |
1,625 |
13,020 |
222 |
14,867 |
| Chromosome 8 |
2,692 |
17,984 |
149 |
20,825 |
| Chromosome 9 |
2,502 |
13,826 |
181 |
16,509 |
| Chromosome 10 |
1,958 |
14,468 |
129 |
16,555 |
| Chromosome 11 |
1,403 |
10,919 |
63 |
12,385 |
| Chromosome 12 |
1,807 |
10,947 |
112 |
12,866 |
| Chromosome 13 |
1,426 |
12,589 |
130 |
14,145 |
| Chromosome Un |
770 |
23,175 |
175 |
24,120 |
| Total |
27,148 |
207,167 |
1,748 |
236,063 |
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| II. Comparison of versions 1.0 and 2.0 of Sesamum indicum genomics data |
| Categories |
Version 2.0 |
Scaffold Numbers v2.0 |
Genome Size v2.0 (Mb) |
Version 1.0 |
Scaffold Numbers v1.0 |
Genome Size v1.0 (Mb) |
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Chromosome 1 |
17 |
20.26 |
Linkage Group 1 |
10 |
18.58 |
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Chromosome 2 |
25 |
18.42 |
Linkage Group 2 |
8 |
18.5 |
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Chromosome 3 |
22 |
25.85 |
Linkage Group 3 |
14 |
24.93 |
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Chromosome 4 |
27 |
20.58 |
Linkage Group 4 |
18 |
17.36 |
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Chromosome 5 |
23 |
16.58 |
Linkage Group 5 |
13 |
18.9 |
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Chromosome 6 |
24 |
25.97 |
Linkage Group 6 |
13 |
25.29 |
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Chromosome 7 |
34 |
16.76 |
Linkage Group 7 |
14 |
11.73 |
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Chromosome 8 |
65 |
26.18 |
Linkage Group 8 |
9 |
21.52 |
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Chromosome 9 |
14 |
22.85 |
Linkage Group 9&15 |
11 |
22.46 |
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Chromosome 10 |
22 |
19.49 |
Linkage Group 10 |
10 |
17.25 |
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Chromosome 11 |
14 |
14.05 |
Linkage Group 11 |
9 |
15.45 |
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Chromosome 12 |
18 |
16.28 |
Linkage Group 12&16 |
10 |
11.34 |
|
Chromosome 13 |
22 |
16.47 |
Linkage Group 13&14 |
11 |
9.93 |
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Total |
13 chromosomes |
327 |
259.73 |
16 linkage groups |
150 |
233.22 |
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| √ Comparative Genomics Statistics: |
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I. Intra-species comparative analysis |
| Species |
Total Scaffolds or Contigs |
Anchored Scaffolds or Contigs |
Unanchored Scaffolds or Contigs |
| Sesamum indicum var. Zhongzhi13 vs. Yuzhi11 |
5,868 |
2,788 |
3,080 |
| Sesamum indicum var. Zhongzhi13 vs. Swetha |
76,023 |
18,390 |
57,633 |
| Sesamum indicum var. Zhongzhi13 vs. Baizhima |
73,395 |
18,825 |
54,570 |
| Sesamum indicum var. Zhongzhi13 vs. Mishuozhima |
49,167 |
21,373 |
27,794 |
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II. Interspecies comparative analysis |
| Species |
Collinear regions |
Involved Genes in S. indicum |
| Sesamum indicum var. Zhongzhi13 vs. Arabidopsis thaliana |
587 |
5,754 |
| Sesamum indicum var. Zhongzhi13 vs. Oryza sativa |
66 |
466 |
| Sesamum indicum var. Zhongzhi13 vs. Sorghum bicolor |
133 |
892 |
| Sesamum indicum var. Zhongzhi13 vs. Solanum lycopersicum |
591 |
8,240 |
| Sesamum indicum var. Zhongzhi13 vs. Solanum tuberosum |
127 |
968 |
| Sesamum indicum var. Zhongzhi13 vs. Vitis vinifera |
519 |
7,906 |
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√ Transcriptomics Statistics: |
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Experiments |
Numbers of Samples |
Involved Tissues |
Involved Genes |
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Waterlogging Resistance |
10 |
Root |
22,509 |
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Drought Tolerance |
10 |
Leaf |
21,577 |
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Three Color Seeds |
13 |
Seed and Capsule |
22,250 |
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Determinate and Indeterminate Growth Habits |
6 |
Stem tips and Leaf |
25,838 |
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Seed Development |
36 |
Seed and Capsule |
22,095 |
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